Freeware Descriptions:
Microarray Explorer (MAExplorer) is a Java-based data-mining facility for cDNA or oligonucleiotide microarray databases. It may be downloaded and run as a stand-alone application on your computer. Its exploratory data analysis environment provides tools for the data-mining of quantitative expression profiles across multiple microarrays. Read the Introduction for an overview.
Here is complete features (taken from authors site):
- Analyzes data (after arrays have been scanned and spots quantified)
- Handles multiple cDNA or oligo array samples with replicate spots
- Manages replicate samples, named condition sets of samples, and lists of condition sets
- Manages named subsets of genes
- Handles intensity or ratio (Cy3/Cy5) quantified array data
- Analyzes data for 2-conditions and N-condition expression profiles including ANOVA on any number of conditions of replicate samples
- Data-filters gene sets by statistics, clustering, gene set membership
- Provides direct data manipulation in graphics, spreadsheets and sample management
- Accesses genomic Web servers from plots and reports
- Converts your data using Cvt2Mae data conversion wizard
- Both MAExplorer and Cvt2Mae are written in Java for portability with download installers making it easy to run on any system
- Users may update these programs, once installed, by downloading just the Java jar file(s) using update commands.
- May be extended using new analytic methods written as either
- Java plug-ins using the MAEPlugin Open Java API, or
- R statistics and graphics language plug-ins methods called RLOs using the RtestPlugin tool
File Size / OS:
- 14.1 MB / Windows 98 - 2000 - ME - NT - XP - 2003 - Vista
Download:
